Adopt
Loads [[role]], [[color]], or [[perspective]] JSON configuration to enable specialized thinking modes.
Tools
26 tools available
AnalyzeConceptCorruption
⚠️ **MUST USE BEFORE RepairConcepts.** Read-only diagnostic revealing `[[WikiLink]]` families and variants like [[tool]] vs [[tools]] for safe consolidation planning.
AssumptionLedger
Declare, update, and track assumptions without auto-inference. Stores as markdown in `memory://assumptions/` with `[[WikiLink]]` integration (e.g., [[hypothesis]], [[validation-plan]]).
BuildContext
Traverses concept relationships via multi-hop graph queries.
DeleteMemory
Permanently removes memory files from disk with confirmation safety.
EditMemory
Modifies existing memory files with [[WikiLink]] preservation and checksum safety for graph integrity.
ExtractConceptsFromFile
Extracts `[[WikiLink]]` concepts from memory files to analyze graph nodes before synchronization.
FindSimilarConcepts
Discovers semantically similar concepts using 384-dimensional vector embeddings and cosine similarity.
GetConfig
Returns Maenifold system configuration for debugging and troubleshooting.
GetHelp
Loads complete tool documentation from `~/maenifold/assets/usage/tools/{toolname}.md` for detailed usage guidance.
ListAssets
Lists available asset types or the metadata for a specific asset type.
ListMemories
Explores memory system folder structure with file counts and sizes for navigation and organization planning.
MemoryStatus
Returns system statistics: file counts, graph metrics, storage usage.
MoveMemory
Relocates/renames knowledge files in `~/maenifold/memory/` while preserving `[[WikiLinks]]` and updating metadata timestamps.
ReadMcpResource
Reads MCP resource content by URI. Provides CLI-accessible access to asset resources (workflows, roles, colors, perspectives).
ReadMemory
Retrieves content from `~/maenifold/memory/` files by URI or title with checksum for safe editing.
RecentActivity
Monitors system activity with time-based filtering for memory files and thinking sessions.
RepairConcepts
Repairs graph corruption by replacing `[[WikiLink]]` variants like [[tools]] → [[tool]] with canonical form in source markdown files. **DANGER: Permanently modifies files.**
RunFullBenchmark
Validates Ma Core performance claims: GRPH-009 CTE vs N+1, search latency, sync timing, complex traversal bottlenecks.
SearchMemories
Search memory files by content with three modes: **Hybrid** (default), **Semantic**, and **FullText**.
Sequential Thinking
A detailed tool for dynamic and reflective problem-solving through thoughts. This tool helps analyze problems through a flexible thinking process that can adapt and evolve. Each thought can build on, question, or revise previous insights as understanding deepens.
Sync
Rebuilds knowledge graph from all `[[WikiLink]]` concepts in memory files. Extracts concepts, builds co-occurrence relationships, updates search indices.
UpdateAssets
Refreshes `~/maenifold/assets/` from packaged assets after maenifold upgrades.
Visualize
Generates Mermaid diagrams of concept relationships from `~/maenifold/memory.db` graph database.
Workflow
Orchestrates systematic problem-solving through predefined methodologies with embedded sequential thinking.
WriteMemory
Creates knowledge files in `~/maenifold/memory/` with automatic graph integration via `[[WikiLink]]` concepts.